Beautiful tools to analyze 3D/4D image
Child of Scientific Python, Ndimage is a powerful tool
mageJ is a public domain Java image processing program inspired by NIH Image
μManager is a software package for control of automated microscopes. Together with the image processing application ImageJ, μManager provides a comprehensive, freely available, imaging solution.
An interactive learning and segmentation toolkit
QuPath is a cross-platform software application designed for bioimage analysis - and specifically to meet the needs of whole slide image analysis and digital pathology.
Installing Bio-Formats in ImageJ: Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.
Fiji is an image processing package — a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Processing is a flexible software sketchbook and a language for learning how to code within the context of the visual arts.Free to download and open source and can use OpenGL integration for accelerated 2D and 3D
CellProfiler is free, open-source software for quantitative analysis of biological images. No prior experience in programming or computer vision is required
Utube channel for webinars on new advanced technologie around microscopy and image analysis