CBI Image Processing is the showcase for CBI image analysis. We list in our database all the works or projects developed around image analysis. Our goal is to provide CBI members with a database where they can quickly find collaborations for their projects.

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This macro works with 3D+t data from live microscopy. It opens the file, stitches the tiles, corrects the drift in all the dimensions, performs a best focus projection to get a 2D+t all in focus movie
image

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The plugin is write from informations get in FibrilTool by Arezki Boudaoud et al. Nature Protocols. A Results tab gives the average properties of each region scanned in open image -image title -x,y
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These is an assistant macro allowing to count and measure automatically nucleus that contain 2 fluorochromes (2 channels) and avoid to count nucleus with one color

2D +t all in focus movie

March 9, 2020 Added by Allio

This macro works with 3D+t data from live microscopy. It opens the file, stitches the tiles, corrects the drift in all the dimensions, performs a best focus projection to get a 2D+t all in focus movie automatically saved in a specific folder. Needs BioFormat, Stack Focuser, ImageD, Correct 3D Drifts plugIns.


eigen_values

Dec. 16, 2019 Added by rouviere

The plugin is write from informations get in FibrilTool by Arezki Boudaoud et al. Nature Protocols. A Results tab gives the average properties of each region scanned in open image -image title -x,y coordinates of region centroid -nematic tensor average orientation (angle in range -90:90 in degrees) -quality of the orientation (score between 0 and 1) Results : An overlay with a colored line on each region is shown on original image, a plot of orientations distribution and a "Results" table with orientation angles and a quality parameter.


Automatic Measure nucleus

Nov. 21, 2019 Added by ronsin

These is an assistant macro allowing to count and measure automatically nucleus that contain 2 fluorochromes (2 channels) and avoid to count nucleus with one color